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Belozersky Institute

GeneBee

Russian EMBnet Node


Basic Screening by Similarity
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Protein databanks:
Motif's power
threshold

Alignment's power
threshold

Aminoacid matrices
Query sequence name

Data Type
Sequence
Alignment
       Query Sequence (without name) OR Alignment       
Alignment example:
FA9_CAVPO    GPHVTEVEGTNFLTGIISWGEE-CAMKGKYGIYTKVSR
FA9_PIG      GPHVTEVEGTSFLTGIISWGEE-CAVKGKYGIYTKVSR
KAG_PIG      GPLICNGM----WQGITSWGhtpCGSANKPSIYTKLIF

FA9_CAVPO    FCAGFHEGGRDSCQGDSG
FA9_PIG      FCAGFHEGGKDSCLGDSG
KAG_PIG      LCAGYLPGGKDTCMGDSG 

Last updated - August 14, 2000.
Any comments or suggestions are welcomed at: nik@genebee.msu.su