Screening by similarity

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Parameters
Motif's length threshold	Motif's power threshold	Alignment's power threshold
Coincidence ratio	Maximum number of shifts	Maximum number of reported alignments
Start position of query sequence	End position of query sequence	Gap penalty

Strand

Clusterization type

Threshold of motif's
homology percentage

Threshold of alignment's
conservativity

Aminoacid colors	Aminoacid matrices	Accurate dothelix Yes No
Code	Aminoacid matrices	Motif frequences recalc Yes No

Receive bank sequences Yes No	Data Type Sequence Alignment	Your E-mail address
Receive 3D coordinate Yes No	Query sequence name

Enter or Paste here your Sequence without name OR Alignment

Alignment example:

FA9_CAVPO  GPHVTEVEGTNFLTGIISWGEE-CAMKGKYGIYTKVSR
FA9_PIG    GPHVTEVEGTSFLTGIISWGEE-CAVKGKYGIYTKVSR
KAG_PIG    GPLICNGM----WQGITSWGhtpCGSANKPSIYTKLIF

FA9_CAVPO  FCAGFHEGGRDSCQGDSG
FA9_PIG    FCAGFHEGGKDSCLGDSG
KAG_PIG    LCAGYLPGGKDTCMGDSG

Last updated - August 14, 2000.
Any comments or suggestions are welcomed at: nik@genebee.msu.su