RNA secondary structure prediction

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	Simple Query Form

Method	Energy threshold	Conserved factor	Compensated factor
Cluster factor	Conservativity	Greedy parameter	Part of sequence to
Treated sequence	Input Type Alignment Sequence	Include picture	Sequence name

Alignment OR sequence (without name). The usage of Alignment is strongly recommended.

Alignment example:

Sequence example:

ANMF   CGCGGGGTAGAGCAGCCTGGTAGCTCGTCGGGCTCATA
AQTRNF GCC-AGGATAGCTCAGTTGGTAGAGCAGAGGACTGAAA
BGTRF  GCC-AGGATAGCTCAGTTGGTAGAGCAGAGGACTGAAT

ANMF   ATCCTCTCCCCGCC----
AQTRNF ATCCGCCTCCCGGCACCA
BGTRF  ATCCGCCTCCCGGCACCA

tggcacaagc gccgcaaaac cgggggcaag agaaagccct
accacaagaa gcggaagtat gagttggggc gcccagctgc
caacaccaag ttggcccccg ccgcatccac acagtccgtg
tgcggggagg taacaagaaa taccgtgccc tgaggttgga
tggaggagca gttccagcag ggcaagcttc ttggtgagaa
ggcgtgcatc gcttcaaggc cgggacagtg tggccgagca
gatggctatg tgctagaggg caaagagttg gagttctatc
ttaggaaaat caaggcccgc

Last updated - May 16, 2001.
Any comments or suggestions are welcomed at: nik@genebee.msu.su