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Belozersky Institute

 GeneBee

Russian EMBnet Node
AliBee - Multiple Alignment
Max. number of motifs (10 to 300)
 Length threshold(4 to 50)
 Power threshold(2 to 20)
Coincidence ratio(0 to 1)
 Minimum letter frequence 
 Windows width(3 to 7)
Maximum number of shifts(1 to 100)
 Minimum homology ratio(0 to 1)
 How to process motifs
Method
 Gap penalty (in SD units)(1 to 5)
 Register size
Matrix
 Colors

 Motif frequences recalc
 
Yes No 		Result Alignment Format:
Tree and Picture Options
Extra tree format
 Picture formats
 Bootstrap
Yes No
You can paste or edit your sequences right here (in FASTA format)
Example: 
>SeqName1
MLPTAVLLVL AVSVAARDNA TCDGPCGLRF RQKLESGMRV
MYHNNRRYHT CGGILLNSHW VLTAAHCFKN KKKVT
>SeqName2
IVGGRRAQPQ EFPFLASIQK QGRPFCAGAL VHPRFVLTAA
RQQEQSRQTF SIRSISQNGY DPRQNLNDVL
>SeqName3
SRRTYTLTDY LKSTFR

Last updated - December 15, 2001.
Comments and bug-reports send to Vladimir Nikolaev